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nmWTAI-Platform/3rd/VTK7.1/source/VTK-7.1.1/Imaging/Hybrid/vtkGaussianSplatter.cxx

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22 KiB
C++

/*=========================================================================
Program: Visualization Toolkit
Module: vtkGaussianSplatter.cxx
Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
#include "vtkGaussianSplatter.h"
#include "vtkCompositeDataIterator.h"
#include "vtkCompositeDataSet.h"
#include "vtkDoubleArray.h"
#include "vtkImageData.h"
#include "vtkInformation.h"
#include "vtkInformationVector.h"
#include "vtkMultiBlockDataSet.h"
#include "vtkNew.h"
#include "vtkObjectFactory.h"
#include "vtkSmartPointer.h"
#include "vtkStreamingDemandDrivenPipeline.h"
#include "vtkPointData.h"
#include "vtkSMPTools.h"
#include <algorithm>
#include <cmath>
vtkStandardNewMacro(vtkGaussianSplatter);
//----------------------------------------------------------------------------
// Algorithm and integration into vtkSMPTools
class vtkGaussianSplatterAlgorithm
{
public:
vtkGaussianSplatter *Splatter;
double *Scalars;
vtkIdType Dims[3], SliceSize;
double Origin[3], Spacing[3], Radius2;
class Splat
{
public:
vtkGaussianSplatterAlgorithm *Algo;
vtkIdType XMin, XMax, YMin, YMax, ZMin, ZMax;
Splat(vtkGaussianSplatterAlgorithm *algo)
{this->Algo = algo;}
void SetBounds(int min[3], int max[3])
{
this->XMin = min[0]; this->XMax = max[0];
this->YMin = min[1]; this->YMax = max[1];
this->ZMin = min[2]; this->ZMax = max[2];
}
void operator()(vtkIdType slice, vtkIdType end)
{
vtkIdType i, j, jOffset, kOffset, idx;
double cx[3], dist2;
for ( ; slice < end; ++slice )
{
// Loop over all sample points in volume within footprint and
// evaluate the splat
cx[2] = this->Algo->Origin[2] + this->Algo->Spacing[2]*slice;
kOffset = slice*this->Algo->SliceSize;
for (j=this->YMin; j<=this->YMax; j++)
{
cx[1] = this->Algo->Origin[1] + this->Algo->Spacing[1]*j;
jOffset = j*this->Algo->Dims[0];
for (i=this->XMin; i<=this->XMax; i++)
{
cx[0] = this->Algo->Origin[0] + this->Algo->Spacing[0]*i;
dist2 = this->Algo->Splatter->SamplePoint(cx);
if ( dist2 <= this->Algo->Radius2 )
{
idx = i + jOffset + kOffset;
this->Algo->Splatter->SetScalar(idx,dist2, this->Algo->Scalars+idx);
}//if within splat radius
}//i
}//j
}//k within splat footprint
}
};
};
//----------------------------------------------------------------------------
// Create the VTK class proper. Construct object with dimensions=(50,50,50);
// automatic computation of bounds; a splat radius of 0.1; an exponent factor
// of -5; and normal and scalar warping turned on.
vtkGaussianSplatter::vtkGaussianSplatter()
{
this->SampleDimensions[0] = 50;
this->SampleDimensions[1] = 50;
this->SampleDimensions[2] = 50;
this->Radius = 0.1;
this->ExponentFactor = -5.0;
this->ModelBounds[0] = 0.0;
this->ModelBounds[1] = 0.0;
this->ModelBounds[2] = 0.0;
this->ModelBounds[3] = 0.0;
this->ModelBounds[4] = 0.0;
this->ModelBounds[5] = 0.0;
this->NormalWarping = 1;
this->Eccentricity = 2.5;
this->ScalarWarping = 1;
this->ScaleFactor = 1.0;
this->Capping = 1;
this->CapValue = 0.0;
this->AccumulationMode = VTK_ACCUMULATION_MODE_MAX;
this->NullValue = 0.0;
}
//----------------------------------------------------------------------------
int vtkGaussianSplatter::RequestInformation (
vtkInformation * vtkNotUsed(request),
vtkInformationVector ** vtkNotUsed( inputVector ),
vtkInformationVector *outputVector)
{
// get the info objects
vtkInformation* outInfo = outputVector->GetInformationObject(0);
// use model bounds if set
this->Origin[0] = 0;
this->Origin[1] = 0;
this->Origin[2] = 0;
if ( this->ModelBounds[0] < this->ModelBounds[1] &&
this->ModelBounds[2] < this->ModelBounds[3] &&
this->ModelBounds[4] < this->ModelBounds[5] )
{
this->Origin[0] = this->ModelBounds[0];
this->Origin[1] = this->ModelBounds[2];
this->Origin[2] = this->ModelBounds[4];
}
outInfo->Set(vtkDataObject::ORIGIN(), this->Origin, 3);
int i;
for (i=0; i<3; i++)
{
this->Spacing[i] = (this->ModelBounds[2*i+1] - this->ModelBounds[2*i])
/ (this->SampleDimensions[i] - 1);
if ( this->Spacing[i] <= 0.0 )
{
this->Spacing[i] = 1.0;
}
}
outInfo->Set(vtkDataObject::SPACING(),this->Spacing,3);
outInfo->Set(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT(),
0, this->SampleDimensions[0] - 1,
0, this->SampleDimensions[1] - 1,
0, this->SampleDimensions[2] - 1);
vtkDataObject::SetPointDataActiveScalarInfo(outInfo, VTK_DOUBLE, 1);
return 1;
}
//----------------------------------------------------------------------------
int vtkGaussianSplatter::RequestData(
vtkInformation* vtkNotUsed( request ),
vtkInformationVector** inputVector,
vtkInformationVector* outputVector)
{
// get the data object
vtkInformation *outInfo = outputVector->GetInformationObject(0);
vtkImageData *output = vtkImageData::GetData(outputVector,0);
output->SetExtent(
outInfo->Get(vtkStreamingDemandDrivenPipeline::WHOLE_EXTENT()));
output->AllocateScalars(outInfo);
vtkIdType totalNumPts, numNewPts, ptId, i;
int min[3], max[3];
vtkPointData *pd;
vtkDataArray *inNormals=NULL;
double loc[3];
vtkDoubleArray *newScalars =
vtkArrayDownCast<vtkDoubleArray>(output->GetPointData()->GetScalars());
newScalars->SetName("SplatterValues");
vtkInformation *inInfo = inputVector[0]->GetInformationObject(0);
vtkDataSet *inputDS = vtkDataSet::GetData(inInfo);
vtkCompositeDataSet *inputComposite = vtkCompositeDataSet::GetData(inInfo);
vtkNew< vtkMultiBlockDataSet > tempComposite;
if (inputComposite == NULL)
{
tempComposite->SetNumberOfBlocks(1);
tempComposite->SetBlock(0,inputDS);
inputComposite = tempComposite.GetPointer();
}
vtkDebugMacro(<< "Splatting data");
// Make sure points are available
//
totalNumPts = inputComposite->GetNumberOfPoints();
if (totalNumPts == 0)
{
vtkDebugMacro(<<"No points to splat!");
vtkWarningMacro(<<"No POINTS!!");
return 1;
}
vtkSmartPointer< vtkCompositeDataIterator > dataItr =
vtkSmartPointer< vtkCompositeDataIterator >::Take(
inputComposite->NewIterator());
//decide which array to splat, if any
dataItr->InitTraversal();
vtkDataSet* ds = NULL;
while (ds == NULL && ! dataItr->IsDoneWithTraversal())
{
ds = vtkDataSet::SafeDownCast(dataItr->GetCurrentDataObject());
}
if (ds == NULL)
{
vtkDebugMacro(<<"The input is an empty block structure");
return 1;
}
output->SetDimensions(this->GetSampleDimensions());
this->ComputeModelBounds(inputComposite,output, outInfo);
// Compute the radius of influence of the points. If an
// automatically generated bounding box has been generated, increase
// its size slightly to acoomodate the radius of influence.
//
this->Eccentricity2 = this->Eccentricity * this->Eccentricity;
numNewPts = this->SampleDimensions[0] * this->SampleDimensions[1] *
this->SampleDimensions[2];
double *scalars = newScalars->WritePointer(0,numNewPts);
std::fill_n(scalars,numNewPts,this->NullValue);
this->Visited = new char[numNewPts];
std::fill_n(this->Visited,numNewPts,0);
pd = ds->GetPointData();
bool useScalars = false;
int association = vtkDataObject::FIELD_ASSOCIATION_POINTS;
vtkDataArray *inScalars = this->GetInputArrayToProcess(0,ds,association);
if (!inScalars)
{
inScalars = pd->GetScalars();
useScalars = true;
}
// Set up function pointers to sample functions
//
if ( this->NormalWarping && (inNormals=pd->GetNormals()) != NULL )
{
this->Sample = &vtkGaussianSplatter::EccentricGaussian;
}
else
{
this->Sample = &vtkGaussianSplatter::Gaussian;
}
if ( this->ScalarWarping && inScalars != NULL )
{
this->SampleFactor = &vtkGaussianSplatter::ScalarSampling;
}
else
{
this->SampleFactor = &vtkGaussianSplatter::PositionSampling;
this->S = 0.0; //position sampling does not require S to be defined
//but this makes purify happy.
}
// Prepare for parallel splatting
vtkGaussianSplatterAlgorithm algo;
algo.Splatter = this;
algo.Scalars = scalars;
algo.Radius2 = this->Radius2;
algo.SliceSize = this->SampleDimensions[0]*this->SampleDimensions[1];
for (i=0; i<3; ++i)
{
algo.Dims[i] = this->SampleDimensions[i];
algo.Origin[i] = this->Origin[i];
algo.Spacing[i] = this->Spacing[i];
}
vtkGaussianSplatterAlgorithm::Splat splat(&algo);
// Process all input datasets
for (dataItr->InitTraversal(); !dataItr->IsDoneWithTraversal(); dataItr->GoToNextItem())
{
vtkDataSet* input = vtkDataSet::SafeDownCast(dataItr->GetCurrentDataObject());
if (!input)
{
continue;
}
vtkDataArray* myScalars = NULL;
if (inScalars != NULL)
{
if (useScalars)
{
myScalars = input->GetPointData()->GetScalars();
}
else
{
myScalars = this->GetInputArrayToProcess(0,input,association);
}
}
if (inScalars != NULL && myScalars == NULL)
{
vtkWarningMacro(<<"Piece does not have selected scalars array");
continue;
}
vtkDataArray* myNormals = NULL;
if (inNormals != NULL)
{
myNormals = input->GetPointData()->GetNormals();
}
if (this->NormalWarping && inNormals != NULL && myNormals == NULL)
{
vtkWarningMacro(<<"Piece does not have required normals array");
continue;
}
vtkIdType numPts = input->GetNumberOfPoints();
// Traverse all points - splatting each into the volume.
// For each point, determine which voxel it is in. Then determine
// the subvolume that the splat is contained in, and process that.
//
int abortExecute=0;
vtkIdType progressInterval = numPts/20 + 1;
for (ptId=0; ptId < numPts && !abortExecute; ptId++)
{
if ( ! (ptId % progressInterval) )
{
vtkDebugMacro(<<"Inserting point #" << ptId);
this->UpdateProgress (static_cast<double>(ptId)/numPts);
abortExecute = this->GetAbortExecute();
}
this->P = input->GetPoint(ptId);
if ( myNormals != NULL )
{
this->N = myNormals->GetTuple(ptId);
}
if ( myScalars != NULL )
{
this->S = myScalars->GetComponent(ptId,0);
}
// Determine the voxel that the point is in
for (i=0; i<3; i++)
{
loc[i] = (this->P[i] - this->Origin[i]) / this->Spacing[i];
}
// Determine splat footprint
for (i=0; i<3; i++)
{
min[i] = static_cast<int>(floor(static_cast<double>(
loc[i])-this->SplatDistance[i]));
max[i] = static_cast<int>(ceil(static_cast<double>(
loc[i])+this->SplatDistance[i]));
if ( min[i] < 0 )
{
min[i] = 0;
}
if ( max[i] >= this->SampleDimensions[i] )
{
max[i] = this->SampleDimensions[i] - 1;
}
}
// Parallel splat the point
splat.SetBounds(min,max);
vtkSMPTools::For(min[2],max[2]+1, splat);
}//for all input points
}//for all datasets
// If capping is turned on, set the distances of the outside of the volume
// to the CapValue.
//
if ( this->Capping )
{
this->Cap(newScalars);
}
vtkDebugMacro(<< "Splatted " << totalNumPts << " points");
// Update self and release memeory
//
delete [] this->Visited;
return 1;
}
//----------------------------------------------------------------------------
void vtkGaussianSplatter::ComputeModelBounds(vtkCompositeDataSet *input,
vtkImageData *output,
vtkInformation *outInfo)
{
double *bounds, maxDist;
double tempBounds[6] = { 1, -1, 1, -1 , 1, -1};
int i, adjustBounds=0;
// compute model bounds if not set previously
if ( this->ModelBounds[0] >= this->ModelBounds[1] ||
this->ModelBounds[2] >= this->ModelBounds[3] ||
this->ModelBounds[4] >= this->ModelBounds[5] )
{
adjustBounds = 1;
vtkSmartPointer< vtkCompositeDataIterator > itr =
vtkSmartPointer< vtkCompositeDataIterator >::Take(
input->NewIterator());
for (itr->InitTraversal(); ! itr->IsDoneWithTraversal(); itr->GoToNextItem())
{
vtkDataSet* ds = vtkDataSet::SafeDownCast(itr->GetCurrentDataObject());
if (ds)
{
if (tempBounds[0] > tempBounds[1])
{
ds->GetBounds(tempBounds);
}
else
{
double* dsBounds = ds->GetBounds();
for (int j = 0; j < 3; ++j)
{
tempBounds[2*j] = std::min(tempBounds[2*j],dsBounds[2*j]);
tempBounds[2*j+1] = std::max(tempBounds[2*j+1],dsBounds[2*j+1]);
}
}
}
}
bounds = tempBounds;
}
else
{
bounds = this->ModelBounds;
}
for (maxDist=0.0, i=0; i<3; i++)
{
if ( (bounds[2*i+1] - bounds[2*i]) > maxDist )
{
maxDist = bounds[2*i+1] - bounds[2*i];
}
}
maxDist *= this->Radius;
this->Radius2 = maxDist * maxDist;
// adjust bounds so model fits strictly inside (only if not set previously)
if ( adjustBounds )
{
for (i=0; i<3; i++)
{
this->ModelBounds[2*i] = bounds[2*i] - maxDist;
this->ModelBounds[2*i+1] = bounds[2*i+1] + maxDist;
}
}
// Set volume origin and data spacing
outInfo->Set(vtkDataObject::ORIGIN(),
this->ModelBounds[0],this->ModelBounds[2],
this->ModelBounds[4]);
memcpy(this->Origin,outInfo->Get(vtkDataObject::ORIGIN()), sizeof(double)*3);
output->SetOrigin(this->Origin);
for (i=0; i<3; i++)
{
this->Spacing[i] = (this->ModelBounds[2*i+1] - this->ModelBounds[2*i])
/ (this->SampleDimensions[i] - 1);
if ( this->Spacing[i] <= 0.0 )
{
this->Spacing[i] = 1.0;
}
}
outInfo->Set(vtkDataObject::SPACING(),this->Spacing,3);
output->SetSpacing(this->Spacing);
// Determine the splat propagation distance...used later
for (i=0; i<3; i++)
{
this->SplatDistance[i] = maxDist / this->Spacing[i];
}
}
//----------------------------------------------------------------------------
// Compute the size of the sample bounding box automatically from the
// input data.
void vtkGaussianSplatter::ComputeModelBounds(vtkDataSet *input,
vtkImageData *output,
vtkInformation *outInfo)
{
double *bounds, maxDist;
int i, adjustBounds=0;
// compute model bounds if not set previously
if ( this->ModelBounds[0] >= this->ModelBounds[1] ||
this->ModelBounds[2] >= this->ModelBounds[3] ||
this->ModelBounds[4] >= this->ModelBounds[5] )
{
adjustBounds = 1;
bounds = input->GetBounds();
}
else
{
bounds = this->ModelBounds;
}
for (maxDist=0.0, i=0; i<3; i++)
{
if ( (bounds[2*i+1] - bounds[2*i]) > maxDist )
{
maxDist = bounds[2*i+1] - bounds[2*i];
}
}
maxDist *= this->Radius;
this->Radius2 = maxDist * maxDist;
// adjust bounds so model fits strictly inside (only if not set previously)
if ( adjustBounds )
{
for (i=0; i<3; i++)
{
this->ModelBounds[2*i] = bounds[2*i] - maxDist;
this->ModelBounds[2*i+1] = bounds[2*i+1] + maxDist;
}
}
// Set volume origin and data spacing
outInfo->Set(vtkDataObject::ORIGIN(),
this->ModelBounds[0],this->ModelBounds[2],
this->ModelBounds[4]);
memcpy(this->Origin,outInfo->Get(vtkDataObject::ORIGIN()), sizeof(double)*3);
output->SetOrigin(this->Origin);
for (i=0; i<3; i++)
{
this->Spacing[i] = (this->ModelBounds[2*i+1] - this->ModelBounds[2*i])
/ (this->SampleDimensions[i] - 1);
if ( this->Spacing[i] <= 0.0 )
{
this->Spacing[i] = 1.0;
}
}
outInfo->Set(vtkDataObject::SPACING(),this->Spacing,3);
output->SetSpacing(this->Spacing);
// Determine the splat propagation distance...used later
for (i=0; i<3; i++)
{
this->SplatDistance[i] = maxDist / this->Spacing[i];
}
}
// Set the dimensions of the sampling structured point set.
void vtkGaussianSplatter::SetSampleDimensions(int i, int j, int k)
{
int dim[3];
dim[0] = i;
dim[1] = j;
dim[2] = k;
this->SetSampleDimensions(dim);
}
//----------------------------------------------------------------------------
void vtkGaussianSplatter::SetSampleDimensions(int dim[3])
{
int dataDim, i;
vtkDebugMacro(<< " setting SampleDimensions to (" << dim[0] << ","
<< dim[1] << "," << dim[2] << ")");
if (dim[0] != this->SampleDimensions[0] ||
dim[1] != this->SampleDimensions[1] ||
dim[2] != this->SampleDimensions[2] )
{
if ( dim[0]<1 || dim[1]<1 || dim[2]<1 )
{
vtkErrorMacro (<< "Bad Sample Dimensions, retaining previous values");
return;
}
for (dataDim=0, i=0; i<3 ; i++)
{
if (dim[i] > 1)
{
dataDim++;
}
}
if ( dataDim < 3 )
{
vtkErrorMacro(<<"Sample dimensions must define a volume!");
return;
}
for ( i=0; i<3; i++)
{
this->SampleDimensions[i] = dim[i];
}
this->Modified();
}
}
//----------------------------------------------------------------------------
void vtkGaussianSplatter::Cap(vtkDoubleArray *s)
{
int i,j,k;
vtkIdType idx;
int d01=this->SampleDimensions[0]*this->SampleDimensions[1];
// i-j planes
//k = 0;
for (j=0; j<this->SampleDimensions[1]; j++)
{
for (i=0; i<this->SampleDimensions[0]; i++)
{
s->SetTuple(i+j*this->SampleDimensions[0], &this->CapValue);
}
}
k = this->SampleDimensions[2] - 1;
idx = k*d01;
for (j=0; j<this->SampleDimensions[1]; j++)
{
for (i=0; i<this->SampleDimensions[0]; i++)
{
s->SetTuple(idx+i+j*this->SampleDimensions[0], &this->CapValue);
}
}
// j-k planes
//i = 0;
for (k=0; k<this->SampleDimensions[2]; k++)
{
for (j=0; j<this->SampleDimensions[1]; j++)
{
s->SetTuple(j*this->SampleDimensions[0]+k*d01, &this->CapValue);
}
}
i = this->SampleDimensions[0] - 1;
for (k=0; k<this->SampleDimensions[2]; k++)
{
for (j=0; j<this->SampleDimensions[1]; j++)
{
s->SetTuple(i+j*this->SampleDimensions[0]+k*d01, &this->CapValue);
}
}
// i-k planes
//j = 0;
for (k=0; k<this->SampleDimensions[2]; k++)
{
for (i=0; i<this->SampleDimensions[0]; i++)
{
s->SetTuple(i+k*d01, &this->CapValue);
}
}
j = this->SampleDimensions[1] - 1;
idx = j*this->SampleDimensions[0];
for (k=0; k<this->SampleDimensions[2]; k++)
{
for (i=0; i<this->SampleDimensions[0]; i++)
{
s->SetTuple(idx+i+k*d01, &this->CapValue);
}
}
}
//----------------------------------------------------------------------------
//
// Gaussian sampling
//
double vtkGaussianSplatter::Gaussian (double cx[3])
{
return ((cx[0]-P[0])*(cx[0]-P[0]) + (cx[1]-P[1])*(cx[1]-P[1]) +
(cx[2]-P[2])*(cx[2]-P[2]) );
}
//----------------------------------------------------------------------------
//
// Ellipsoidal Gaussian sampling
//
double vtkGaussianSplatter::EccentricGaussian (double cx[3])
{
double v[3], r2, z2, rxy2, mag;
v[0] = cx[0] - this->P[0];
v[1] = cx[1] - this->P[1];
v[2] = cx[2] - this->P[2];
r2 = v[0]*v[0] + v[1]*v[1] + v[2]*v[2];
if ( (mag=this->N[0]*this->N[0]+
this->N[1]*this->N[1]+
this->N[2]*this->N[2]) != 1.0 )
{
if ( mag == 0.0 )
{
mag = 1.0;
}
else
{
mag = sqrt(mag);
}
}
z2 = (v[0]*this->N[0] + v[1]*this->N[1] + v[2]*this->N[2])/mag;
z2 = z2*z2;
rxy2 = r2 - z2;
return (rxy2/this->Eccentricity2 + z2);
}
//----------------------------------------------------------------------------
const char *vtkGaussianSplatter::GetAccumulationModeAsString()
{
if ( this->AccumulationMode == VTK_ACCUMULATION_MODE_MIN )
{
return "Minimum";
}
else if ( this->AccumulationMode == VTK_ACCUMULATION_MODE_MAX )
{
return "Maximum";
}
else //if ( this->AccumulationMode == VTK_ACCUMULATION_MODE_SUM )
{
return "Sum";
}
}
//----------------------------------------------------------------------------
void vtkGaussianSplatter::PrintSelf(ostream& os, vtkIndent indent)
{
this->Superclass::PrintSelf(os,indent);
os << indent << "Sample Dimensions: ("
<< this->SampleDimensions[0] << ", "
<< this->SampleDimensions[1] << ", "
<< this->SampleDimensions[2] << ")\n";
os << indent << "Radius: " << this->Radius << "\n";
os << indent << "Exponent Factor: " << this->ExponentFactor << "\n";
os << indent << "ModelBounds: \n";
os << indent << " Xmin,Xmax: (" << this->ModelBounds[0]
<< ", " << this->ModelBounds[1] << ")\n";
os << indent << " Ymin,Ymax: (" << this->ModelBounds[2]
<< ", " << this->ModelBounds[3] << ")\n";
os << indent << " Zmin,Zmax: (" << this->ModelBounds[4]
<< ", " << this->ModelBounds[5] << ")\n";
os << indent << "Normal Warping: "
<< (this->NormalWarping ? "On\n" : "Off\n");
os << indent << "Eccentricity: " << this->Eccentricity << "\n";
os << indent << "Scalar Warping: "
<< (this->ScalarWarping ? "On\n" : "Off\n");
os << indent << "Scale Factor: " << this->ScaleFactor << "\n";
os << indent << "Capping: " << (this->Capping ? "On\n" : "Off\n");
os << indent << "Cap Value: " << this->CapValue << "\n";
os << indent << "Accumulation Mode: "
<< this->GetAccumulationModeAsString() << "\n";
os << indent << "Null Value: " << this->NullValue << "\n";
}
//----------------------------------------------------------------------------
int vtkGaussianSplatter::FillInputPortInformation(
int vtkNotUsed(port), vtkInformation* info)
{
info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkDataSet");
info->Append(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkCompositeDataSet");
return 1;
}