#ifndef vtkKMeansDistanceFunctor_h #define vtkKMeansDistanceFunctor_h /** * @class vtkKMeansDistanceFunctor * @brief measure distance from k-means cluster centers * * This is an abstract class (with a default concrete subclass) that implements * algorithms used by the vtkKMeansStatistics filter that rely on a distance metric. * If you wish to use a non-Euclidean distance metric (this could include * working with strings that do not have a Euclidean distance metric, implementing * k-mediods, or trying distance metrics in norms other than L2), you * should subclass vtkKMeansDistanceFunctor. */ #include "vtkFiltersStatisticsModule.h" // For export macro #include "vtkObject.h" class vtkVariantArray; class vtkAbstractArray; class vtkTable; class VTKFILTERSSTATISTICS_EXPORT vtkKMeansDistanceFunctor : public vtkObject { public: static vtkKMeansDistanceFunctor* New(); vtkTypeMacro(vtkKMeansDistanceFunctor,vtkObject); void PrintSelf( ostream& os, vtkIndent indent ) VTK_OVERRIDE; /** * Return an empty tuple. These values are used as cluster center coordinates * when no initial cluster centers are specified. */ virtual vtkVariantArray* GetEmptyTuple( vtkIdType dimension ); /** * Compute the distance from one observation to another, returning the distance * in the first argument. */ virtual void operator() ( double&, vtkVariantArray*, vtkVariantArray * ); /** * This is called once per observation per run per iteration in order to assign the * observation to its nearest cluster center after the distance functor has been * evaluated for all the cluster centers. * The distance functor is responsible for incrementally updating the cluster centers * to account for the assignment. */ virtual void PairwiseUpdate( vtkTable* clusterCenters, vtkIdType row, vtkVariantArray* data, vtkIdType dataCardinality, vtkIdType totalCardinality ); /** * When a cluster center (1) has no observations that are closer to it than other cluster centers * or (2) has exactly the same coordinates as another cluster center, its coordinates should be * perturbed. This function should perform that perturbation. * Since perturbation relies on a distance metric, this function is the responsibility of the * distance functor. */ virtual void PerturbElement( vtkTable*, vtkTable*, vtkIdType, vtkIdType, vtkIdType, double ); /** * Allocate an array large enough to hold \a size coordinates and return a void pointer to this array. * This is used by vtkPKMeansStatistics to send (receive) cluster center coordinates to (from) other processes. */ virtual void* AllocateElementArray( vtkIdType size ); /** * Free an array allocated with AllocateElementArray. */ virtual void DeallocateElementArray( void* ); /** * Return a vtkAbstractArray capable of holding cluster center coordinates. * This is used by vtkPKMeansStatistics to hold cluster center coordinates sent to (received from) other processes. */ virtual vtkAbstractArray* CreateCoordinateArray(); /** * Pack the cluster center coordinates in \a vElements into columns of \a curTable. * This code may assume that the columns in \a curTable are all of the type returned by \a GetNewVTKArray(). */ virtual void PackElements( vtkTable* curTable, void* vElements ); //@{ /** * Unpack the cluster center coordinates in \a vElements into columns of \a curTable. * This code may assume that the columns in \a curTable are all of the type returned by \a GetNewVTKArray(). */ virtual void UnPackElements( vtkTable* curTable, vtkTable* newTable, void* vLocalElements, void* vGlobalElements, int np ); virtual void UnPackElements( vtkTable* curTable, void* vLocalElements, vtkIdType numRows, vtkIdType numCols ); //@} /** * Return the data type used to store cluster center coordinates. */ virtual int GetDataType(); protected: vtkKMeansDistanceFunctor(); ~vtkKMeansDistanceFunctor() VTK_OVERRIDE; vtkVariantArray* EmptyTuple; // Used to quickly initialize Tuple for each datum vtkTable* CenterUpdates; // Used to hold online computation of next iteration's cluster center coords. private: vtkKMeansDistanceFunctor( const vtkKMeansDistanceFunctor& ) VTK_DELETE_FUNCTION; void operator = ( const vtkKMeansDistanceFunctor& ) VTK_DELETE_FUNCTION; }; #endif // vtkKMeansDistanceFunctor_h