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538 lines
19 KiB
C
538 lines
19 KiB
C
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3 weeks ago
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/*=========================================================================
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Program: Visualization Toolkit
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Module: vtkImageData.h
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Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
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All rights reserved.
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See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
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This software is distributed WITHOUT ANY WARRANTY; without even
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the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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PURPOSE. See the above copyright notice for more information.
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=========================================================================*/
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/**
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* @class vtkImageData
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* @brief topologically and geometrically regular array of data
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*
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* vtkImageData is a data object that is a concrete implementation of
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* vtkDataSet. vtkImageData represents a geometric structure that is
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* a topological and geometrical regular array of points. Examples include
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* volumes (voxel data) and pixmaps.
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*/
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#ifndef vtkImageData_h
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#define vtkImageData_h
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#include "vtkCommonDataModelModule.h" // For export macro
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#include "vtkDataSet.h"
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#include "vtkStructuredData.h" // Needed for inline methods
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class vtkDataArray;
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class vtkLine;
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class vtkPixel;
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class vtkVertex;
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class vtkVoxel;
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class VTKCOMMONDATAMODEL_EXPORT vtkImageData : public vtkDataSet
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{
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public:
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static vtkImageData *New();
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vtkTypeMacro(vtkImageData,vtkDataSet);
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void PrintSelf(ostream& os, vtkIndent indent) VTK_OVERRIDE;
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/**
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* Copy the geometric and topological structure of an input image data
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* object.
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*/
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void CopyStructure(vtkDataSet *ds) VTK_OVERRIDE;
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/**
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* Return what type of dataset this is.
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*/
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int GetDataObjectType() VTK_OVERRIDE {return VTK_IMAGE_DATA;};
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//@{
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/**
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* Standard vtkDataSet API methods. See vtkDataSet for more information.
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*/
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vtkIdType GetNumberOfCells() VTK_OVERRIDE;
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vtkIdType GetNumberOfPoints() VTK_OVERRIDE;
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double *GetPoint(vtkIdType ptId) VTK_OVERRIDE;
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void GetPoint(vtkIdType id, double x[3]) VTK_OVERRIDE;
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vtkCell *GetCell(vtkIdType cellId) VTK_OVERRIDE;
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void GetCell(vtkIdType cellId, vtkGenericCell *cell) VTK_OVERRIDE;
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void GetCellBounds(vtkIdType cellId, double bounds[6]) VTK_OVERRIDE;
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virtual vtkIdType FindPoint(double x, double y, double z)
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{
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return this->vtkDataSet::FindPoint(x, y, z);
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}
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vtkIdType FindPoint(double x[3]) VTK_OVERRIDE;
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vtkIdType FindCell(
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double x[3], vtkCell *cell, vtkIdType cellId, double tol2,
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int& subId, double pcoords[3], double *weights) VTK_OVERRIDE;
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vtkIdType FindCell(
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double x[3], vtkCell *cell, vtkGenericCell *gencell,
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vtkIdType cellId, double tol2, int& subId,
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double pcoords[3], double *weights) VTK_OVERRIDE;
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vtkCell *FindAndGetCell(double x[3], vtkCell *cell, vtkIdType cellId,
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double tol2, int& subId, double pcoords[3],
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double *weights) VTK_OVERRIDE;
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int GetCellType(vtkIdType cellId) VTK_OVERRIDE;
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void GetCellPoints(vtkIdType cellId, vtkIdList *ptIds) VTK_OVERRIDE
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{vtkStructuredData::GetCellPoints(cellId,ptIds,this->DataDescription,
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this->GetDimensions());}
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void GetPointCells(vtkIdType ptId, vtkIdList *cellIds) VTK_OVERRIDE
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{vtkStructuredData::GetPointCells(ptId,cellIds,this->GetDimensions());}
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void ComputeBounds() VTK_OVERRIDE;
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int GetMaxCellSize() VTK_OVERRIDE {return 8;}; //voxel is the largest
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//@}
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/**
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* Restore data object to initial state.
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*/
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void Initialize() VTK_OVERRIDE;
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/**
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* Same as SetExtent(0, i-1, 0, j-1, 0, k-1)
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*/
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virtual void SetDimensions(int i, int j, int k);
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/**
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* Same as SetExtent(0, dims[0]-1, 0, dims[1]-1, 0, dims[2]-1)
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*/
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virtual void SetDimensions(const int dims[3]);
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/**
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* Get dimensions of this structured points dataset.
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* It is the number of points on each axis.
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* Dimensions are computed from Extents during this call.
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* \warning Non thread-safe, use second signature if you want it to be.
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*/
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virtual int *GetDimensions();
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/**
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* Get dimensions of this structured points dataset.
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* It is the number of points on each axis.
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* This method is thread-safe.
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* \warning The Dimensions member variable is not updated during this call.
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*/
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virtual void GetDimensions(int dims[3]);
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/**
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* Convenience function computes the structured coordinates for a point x[3].
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* The voxel is specified by the array ijk[3], and the parametric coordinates
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* in the cell are specified with pcoords[3]. The function returns a 0 if the
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* point x is outside of the volume, and a 1 if inside the volume.
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*/
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virtual int ComputeStructuredCoordinates(
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const double x[3], int ijk[3], double pcoords[3]);
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static int ComputeStructuredCoordinates( const double x[3], int ijk[3], double pcoords[3],
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const int* extent,
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const double* spacing,
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const double* origin,
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const double* bounds);
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/**
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* Given structured coordinates (i,j,k) for a voxel cell, compute the eight
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* gradient values for the voxel corners. The order in which the gradient
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* vectors are arranged corresponds to the ordering of the voxel points.
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* Gradient vector is computed by central differences (except on edges of
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* volume where forward difference is used). The scalars s are the scalars
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* from which the gradient is to be computed. This method will treat
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* only 3D structured point datasets (i.e., volumes).
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*/
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virtual void GetVoxelGradient(
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int i,int j,int k, vtkDataArray *s, vtkDataArray *g);
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/**
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* Given structured coordinates (i,j,k) for a point in a structured point
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* dataset, compute the gradient vector from the scalar data at that point.
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* The scalars s are the scalars from which the gradient is to be computed.
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* This method will treat structured point datasets of any dimension.
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*/
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virtual void GetPointGradient(
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int i, int j, int k, vtkDataArray *s, double g[3]);
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/**
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* Return the dimensionality of the data.
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*/
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virtual int GetDataDimension();
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/**
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* Given a location in structured coordinates (i-j-k), return the point id.
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*/
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virtual vtkIdType ComputePointId(int ijk[3]) {
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return vtkStructuredData::ComputePointIdForExtent(this->Extent,ijk);};
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/**
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* Given a location in structured coordinates (i-j-k), return the cell id.
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*/
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virtual vtkIdType ComputeCellId(int ijk[3]) {
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return vtkStructuredData::ComputeCellIdForExtent(this->Extent,ijk);};
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//@{
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/**
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* Set / Get the extent on just one axis
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*/
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virtual void SetAxisUpdateExtent(int axis, int min, int max,
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const int* updateExtent,
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int* axisUpdateExtent);
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virtual void GetAxisUpdateExtent(int axis, int &min, int &max, const int* updateExtent);
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//@}
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//@{
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/**
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* Set/Get the extent. On each axis, the extent is defined by the index
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* of the first point and the index of the last point. The extent should
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* be set before the "Scalars" are set or allocated. The Extent is
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* stored in the order (X, Y, Z).
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* The dataset extent does not have to start at (0,0,0). (0,0,0) is just the
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* extent of the origin.
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* The first point (the one with Id=0) is at extent
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* (Extent[0],Extent[2],Extent[4]). As for any dataset, a data array on point
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* data starts at Id=0.
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*/
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virtual void SetExtent(int extent[6]);
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virtual void SetExtent(int x1, int x2, int y1, int y2, int z1, int z2);
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vtkGetVector6Macro(Extent, int);
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//@}
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//@{
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/**
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* These returns the minimum and maximum values the ScalarType can hold
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* without overflowing.
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*/
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virtual double GetScalarTypeMin(vtkInformation* meta_data);
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virtual double GetScalarTypeMin();
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virtual double GetScalarTypeMax(vtkInformation* meta_data);
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virtual double GetScalarTypeMax();
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//@}
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//@{
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/**
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* Get the size of the scalar type in bytes.
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*/
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virtual int GetScalarSize(vtkInformation* meta_data);
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virtual int GetScalarSize();
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//@}
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//@{
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/**
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* Different ways to get the increments for moving around the data.
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* GetIncrements() calls ComputeIncrements() to ensure the increments are
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* up to date. The first three methods compute the increments based on the
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* active scalar field while the next three, the scalar field is passed in.
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*/
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virtual vtkIdType *GetIncrements();
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virtual void GetIncrements(vtkIdType &incX, vtkIdType &incY, vtkIdType &incZ);
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virtual void GetIncrements(vtkIdType inc[3]);
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virtual vtkIdType *GetIncrements(vtkDataArray *scalars);
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virtual void GetIncrements(vtkDataArray *scalars,
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vtkIdType &incX, vtkIdType &incY, vtkIdType &incZ);
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virtual void GetIncrements(vtkDataArray *scalars, vtkIdType inc[3]);
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//@}
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//@{
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/**
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* Different ways to get the increments for moving around the data.
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* incX is always returned with 0. incY is returned with the
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* increment needed to move from the end of one X scanline of data
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* to the start of the next line. incZ is filled in with the
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* increment needed to move from the end of one image to the start
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* of the next. The proper way to use these values is to for a loop
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* over Z, Y, X, C, incrementing the pointer by 1 after each
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* component. When the end of the component is reached, the pointer
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* is set to the beginning of the next pixel, thus incX is properly set to 0.
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* The first form of GetContinuousIncrements uses the active scalar field
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* while the second form allows the scalar array to be passed in.
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*/
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virtual void GetContinuousIncrements(
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int extent[6], vtkIdType &incX, vtkIdType &incY, vtkIdType &incZ);
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virtual void GetContinuousIncrements(vtkDataArray *scalars,
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int extent[6], vtkIdType &incX, vtkIdType &incY, vtkIdType &incZ);
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//@}
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//@{
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/**
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* Access the native pointer for the scalar data
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*/
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virtual void *GetScalarPointerForExtent(int extent[6]);
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virtual void *GetScalarPointer(int coordinates[3]);
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virtual void *GetScalarPointer(int x, int y, int z);
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virtual void *GetScalarPointer();
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//@}
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//@{
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/**
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* For access to data from tcl
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*/
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virtual float GetScalarComponentAsFloat(int x, int y, int z, int component);
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virtual void SetScalarComponentFromFloat(
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int x, int y, int z, int component, float v);
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virtual double GetScalarComponentAsDouble(int x, int y, int z, int component);
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virtual void SetScalarComponentFromDouble(
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int x, int y, int z, int component, double v);
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//@}
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/**
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* Allocate the point scalars for this dataset. The data type determines
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* the type of the array (VTK_FLOAT, VTK_INT etc.) where as numComponents
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* determines its number of components.
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*/
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virtual void AllocateScalars(int dataType, int numComponents);
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/**
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* Allocate the point scalars for this dataset. The data type and the
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* number of components of the array is determined by the meta-data in
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* the pipeline information. This is usually produced by a reader/filter
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* upstream in the pipeline.
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*/
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virtual void AllocateScalars(vtkInformation* pipeline_info);
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//@{
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/**
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* This method is passed a input and output region, and executes the filter
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* algorithm to fill the output from the input.
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* It just executes a switch statement to call the correct function for
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* the regions data types.
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*/
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virtual void CopyAndCastFrom(vtkImageData *inData, int extent[6]);
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virtual void CopyAndCastFrom(vtkImageData *inData, int x0, int x1,
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int y0, int y1, int z0, int z1)
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{int e[6]; e[0]=x0; e[1]=x1; e[2]=y0; e[3]=y1; e[4]=z0; e[5]=z1;
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this->CopyAndCastFrom(inData, e);}
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//@}
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/**
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* Reallocates and copies to set the Extent to updateExtent.
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* This is used internally when the exact extent is requested,
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* and the source generated more than the update extent.
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*/
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void Crop(const int* updateExtent) VTK_OVERRIDE;
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/**
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* Return the actual size of the data in kibibytes (1024 bytes). This number
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* is valid only after the pipeline has updated. The memory size
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* returned is guaranteed to be greater than or equal to the
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* memory required to represent the data (e.g., extra space in
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* arrays, etc. are not included in the return value). THIS METHOD
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* IS THREAD SAFE.
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*/
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unsigned long GetActualMemorySize() VTK_OVERRIDE;
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//@{
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/**
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* Set the spacing (width,height,length) of the cubical cells that
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* compose the data set.
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*/
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vtkSetVector3Macro(Spacing,double);
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vtkGetVector3Macro(Spacing,double);
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//@}
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//@{
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/**
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* Set/Get the origin of the dataset. The origin is the position in world
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* coordinates of the point of extent (0,0,0). This point does not have to be
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* part of the dataset, in other words, the dataset extent does not have to
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* start at (0,0,0) and the origin can be outside of the dataset bounding
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* box.
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* The origin plus spacing determine the position in space of the points.
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*/
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vtkSetVector3Macro(Origin,double);
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vtkGetVector3Macro(Origin,double);
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//@}
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||
|
|
|
||
|
|
static void SetScalarType(int, vtkInformation* meta_data);
|
||
|
|
static int GetScalarType(vtkInformation* meta_data);
|
||
|
|
static bool HasScalarType(vtkInformation* meta_data);
|
||
|
|
int GetScalarType();
|
||
|
|
const char* GetScalarTypeAsString()
|
||
|
|
{ return vtkImageScalarTypeNameMacro ( this->GetScalarType() ); };
|
||
|
|
|
||
|
|
//@{
|
||
|
|
/**
|
||
|
|
* Set/Get the number of scalar components for points. As with the
|
||
|
|
* SetScalarType method this is setting pipeline info.
|
||
|
|
*/
|
||
|
|
static void SetNumberOfScalarComponents( int n, vtkInformation* meta_data);
|
||
|
|
static int GetNumberOfScalarComponents(vtkInformation* meta_data);
|
||
|
|
static bool HasNumberOfScalarComponents(vtkInformation* meta_data);
|
||
|
|
int GetNumberOfScalarComponents();
|
||
|
|
//@}
|
||
|
|
|
||
|
|
/**
|
||
|
|
* Override these to handle origin, spacing, scalar type, and scalar
|
||
|
|
* number of components. See vtkDataObject for details.
|
||
|
|
*/
|
||
|
|
void CopyInformationFromPipeline(vtkInformation* information) VTK_OVERRIDE;
|
||
|
|
|
||
|
|
/**
|
||
|
|
* Copy information from this data object to the pipeline information.
|
||
|
|
* This is used by the vtkTrivialProducer that is created when someone
|
||
|
|
* calls SetInputData() to connect the image to a pipeline.
|
||
|
|
*/
|
||
|
|
void CopyInformationToPipeline(vtkInformation* information) VTK_OVERRIDE;
|
||
|
|
|
||
|
|
/**
|
||
|
|
* make the output data ready for new data to be inserted. For most
|
||
|
|
* objects we just call Initialize. But for image data we leave the old
|
||
|
|
* data in case the memory can be reused.
|
||
|
|
*/
|
||
|
|
void PrepareForNewData() VTK_OVERRIDE;
|
||
|
|
|
||
|
|
//@{
|
||
|
|
/**
|
||
|
|
* Shallow and Deep copy.
|
||
|
|
*/
|
||
|
|
void ShallowCopy(vtkDataObject *src) VTK_OVERRIDE;
|
||
|
|
void DeepCopy(vtkDataObject *src) VTK_OVERRIDE;
|
||
|
|
//@}
|
||
|
|
|
||
|
|
//--------------------------------------------------------------------------
|
||
|
|
// Methods that apply to any array (not just scalars).
|
||
|
|
// I am starting to experiment with generalizing imaging fitlers
|
||
|
|
// to operate on more than just scalars.
|
||
|
|
|
||
|
|
//@{
|
||
|
|
/**
|
||
|
|
* These are convenience methods for getting a pointer
|
||
|
|
* from any filed array. It is a start at expanding image filters
|
||
|
|
* to process any array (not just scalars).
|
||
|
|
*/
|
||
|
|
void *GetArrayPointerForExtent(vtkDataArray* array, int extent[6]);
|
||
|
|
void *GetArrayPointer(vtkDataArray* array, int coordinates[3]);
|
||
|
|
//@}
|
||
|
|
|
||
|
|
/**
|
||
|
|
* Since various arrays have different number of components,
|
||
|
|
* the will have different increments.
|
||
|
|
*/
|
||
|
|
void GetArrayIncrements(vtkDataArray *array, vtkIdType increments[3]);
|
||
|
|
|
||
|
|
/**
|
||
|
|
* Given how many pixel are required on a side for bounrary conditions (in
|
||
|
|
* bnds), the target extent to traverse, compute the internal extent (the
|
||
|
|
* extent for this ImageData that does not suffer from any boundary
|
||
|
|
* conditions) and place it in intExt
|
||
|
|
*/
|
||
|
|
void ComputeInternalExtent(int *intExt, int *tgtExt, int *bnds);
|
||
|
|
|
||
|
|
/**
|
||
|
|
* The extent type is a 3D extent
|
||
|
|
*/
|
||
|
|
int GetExtentType() VTK_OVERRIDE { return VTK_3D_EXTENT; };
|
||
|
|
|
||
|
|
//@{
|
||
|
|
/**
|
||
|
|
* Retrieve an instance of this class from an information object.
|
||
|
|
*/
|
||
|
|
static vtkImageData* GetData(vtkInformation* info);
|
||
|
|
static vtkImageData* GetData(vtkInformationVector* v, int i=0);
|
||
|
|
//@}
|
||
|
|
|
||
|
|
protected:
|
||
|
|
vtkImageData();
|
||
|
|
~vtkImageData() VTK_OVERRIDE;
|
||
|
|
|
||
|
|
// The extent of what is currently in the structured grid.
|
||
|
|
// Dimensions is just an array to return a value.
|
||
|
|
// Its contents are out of data until GetDimensions is called.
|
||
|
|
int Dimensions[3];
|
||
|
|
vtkIdType Increments[3];
|
||
|
|
|
||
|
|
double Origin[3];
|
||
|
|
double Spacing[3];
|
||
|
|
|
||
|
|
int Extent[6];
|
||
|
|
|
||
|
|
// The first method assumes Active Scalars
|
||
|
|
void ComputeIncrements();
|
||
|
|
// This one is given the number of components of the
|
||
|
|
// scalar field explicitly
|
||
|
|
void ComputeIncrements(int numberOfComponents);
|
||
|
|
void ComputeIncrements(vtkDataArray *scalars);
|
||
|
|
|
||
|
|
// The first method assumes Acitive Scalars
|
||
|
|
void ComputeIncrements(vtkIdType inc[3]);
|
||
|
|
// This one is given the number of components of the
|
||
|
|
// scalar field explicitly
|
||
|
|
void ComputeIncrements(int numberOfComponents, vtkIdType inc[3]);
|
||
|
|
void ComputeIncrements(vtkDataArray *scalars, vtkIdType inc[3]);
|
||
|
|
void CopyOriginAndSpacingFromPipeline(vtkInformation* info);
|
||
|
|
|
||
|
|
vtkTimeStamp ExtentComputeTime;
|
||
|
|
|
||
|
|
void SetDataDescription(int desc);
|
||
|
|
int GetDataDescription() { return this->DataDescription; }
|
||
|
|
|
||
|
|
private:
|
||
|
|
void InternalImageDataCopy(vtkImageData *src);
|
||
|
|
private:
|
||
|
|
|
||
|
|
friend class vtkUniformGrid;
|
||
|
|
|
||
|
|
// for the GetCell method
|
||
|
|
vtkVertex *Vertex;
|
||
|
|
vtkLine *Line;
|
||
|
|
vtkPixel *Pixel;
|
||
|
|
vtkVoxel *Voxel;
|
||
|
|
|
||
|
|
// for the GetPoint method
|
||
|
|
double Point[3];
|
||
|
|
|
||
|
|
int DataDescription;
|
||
|
|
|
||
|
|
vtkImageData(const vtkImageData&) VTK_DELETE_FUNCTION;
|
||
|
|
void operator=(const vtkImageData&) VTK_DELETE_FUNCTION;
|
||
|
|
};
|
||
|
|
|
||
|
|
|
||
|
|
//----------------------------------------------------------------------------
|
||
|
|
inline void vtkImageData::ComputeIncrements()
|
||
|
|
{
|
||
|
|
this->ComputeIncrements(this->Increments);
|
||
|
|
}
|
||
|
|
|
||
|
|
//----------------------------------------------------------------------------
|
||
|
|
inline void vtkImageData::ComputeIncrements(int numberOfComponents)
|
||
|
|
{
|
||
|
|
this->ComputeIncrements(numberOfComponents, this->Increments);
|
||
|
|
}
|
||
|
|
|
||
|
|
//----------------------------------------------------------------------------
|
||
|
|
inline void vtkImageData::ComputeIncrements(vtkDataArray *scalars)
|
||
|
|
{
|
||
|
|
this->ComputeIncrements(scalars, this->Increments);
|
||
|
|
}
|
||
|
|
|
||
|
|
//----------------------------------------------------------------------------
|
||
|
|
inline double * vtkImageData::GetPoint(vtkIdType id)
|
||
|
|
{
|
||
|
|
this->GetPoint(id, this->Point);
|
||
|
|
return this->Point;
|
||
|
|
}
|
||
|
|
|
||
|
|
//----------------------------------------------------------------------------
|
||
|
|
inline vtkIdType vtkImageData::GetNumberOfPoints()
|
||
|
|
{
|
||
|
|
const int *extent = this->Extent;
|
||
|
|
vtkIdType dims[3];
|
||
|
|
dims[0] = extent[1] - extent[0] + 1;
|
||
|
|
dims[1] = extent[3] - extent[2] + 1;
|
||
|
|
dims[2] = extent[5] - extent[4] + 1;
|
||
|
|
|
||
|
|
return dims[0]*dims[1]*dims[2];
|
||
|
|
}
|
||
|
|
|
||
|
|
//----------------------------------------------------------------------------
|
||
|
|
inline int vtkImageData::GetDataDimension()
|
||
|
|
{
|
||
|
|
return vtkStructuredData::GetDataDimension(this->DataDescription);
|
||
|
|
}
|
||
|
|
|
||
|
|
#endif
|