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/*=========================================================================
Program: Visualization Toolkit
Module: vtkSparseArray.h
-------------------------------------------------------------------------
Copyright 2008 Sandia Corporation.
Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
the U.S. Government retains certain rights in this software.
-------------------------------------------------------------------------
Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
/**
* @class vtkSparseArray
* @brief Sparse, independent coordinate storage for N-way arrays.
*
*
* vtkSparseArray is a concrete vtkArray implementation that stores values using
* sparse independent coordinate storage. This means that the array stores the
* complete set of coordinates and the value for each non-null value in the array.
* While this approach requires slightly more storage than other sparse storage
* schemes (such as Compressed-Row or Compressed-Column), it is easier and more
* efficient to work with when implementing algorithms, and it generalizes well
* for arbitrary numbers of dimensions.
*
* In addition to the value retrieval and update methods provided by vtkTypedArray,
* vtkSparseArray provides methods to:
*
* Get and set a special 'null' value that will be returned when retrieving values
* for undefined coordinates.
*
* Clear the contents of the array so that every set of coordinates is undefined.
*
* Sort the array contents so that value coordinates can be visited in a specific order.
*
* Retrieve pointers to the value- and coordinate-storage memory blocks.
*
* Reserve storage for a specific number of non-null values, for efficiency when the
* number of non-null values is known in advance.
*
* Recompute the array extents so that they bound the largest set of non-nullptr values
* along each dimension.
*
* Specify arbitrary array extents.
*
* Add values to the array in amortized-constant time.
*
* Validate that the array does not contain duplicate coordinates.
*
* @sa
* vtkArray, vtkTypedArray, vtkDenseArray
*
* @par Thanks:
* Developed by Timothy M. Shead (tshead@sandia.gov) at Sandia National Laboratories.
*/
#ifndef vtkSparseArray_h
#define vtkSparseArray_h
#include "vtkArrayCoordinates.h"
#include "vtkArraySort.h"
#include "vtkObjectFactory.h"
#include "vtkTypedArray.h"
template <typename T>
class vtkSparseArray : public vtkTypedArray<T>
{
public:
vtkTemplateTypeMacro(vtkSparseArray<T>, vtkTypedArray<T>);
static vtkSparseArray<T>* New();
void PrintSelf(ostream& os, vtkIndent indent) override;
typedef typename vtkArray::CoordinateT CoordinateT;
typedef typename vtkArray::DimensionT DimensionT;
typedef typename vtkArray::SizeT SizeT;
// vtkArray API
bool IsDense() override;
const vtkArrayExtents& GetExtents() override;
SizeT GetNonNullSize() override;
void GetCoordinatesN(const SizeT n, vtkArrayCoordinates& coordinates) override;
vtkArray* DeepCopy() override;
// vtkTypedArray API
const T& GetValue(CoordinateT i) override;
const T& GetValue(CoordinateT i, CoordinateT j) override;
const T& GetValue(CoordinateT i, CoordinateT j, CoordinateT k) override;
const T& GetValue(const vtkArrayCoordinates& coordinates) override;
const T& GetValueN(const SizeT n) override;
void SetValue(CoordinateT i, const T& value) override;
void SetValue(CoordinateT i, CoordinateT j, const T& value) override;
void SetValue(CoordinateT i, CoordinateT j, CoordinateT k, const T& value) override;
void SetValue(const vtkArrayCoordinates& coordinates, const T& value) override;
void SetValueN(const SizeT n, const T& value) override;
// vtkSparseArray API
/**
* Set the value that will be returned by GetValue() for nullptr areas of the array.
*/
void SetNullValue(const T& value);
/**
* Returns the value that will be returned by GetValue() for nullptr areas of the array.
*/
const T& GetNullValue();
/**
* Remove all non-null elements from the array, leaving the number of dimensions, the
* extent of each dimension, and the label for each dimension unchanged.
*/
void Clear();
/**
* Sorts array values so that their coordinates appear in some well-defined order.
* The supplied vtkArraySort object controls which dimensions are sorted, and in what
* order, and should contain one-or-more sort dimensions, up to the number of dimensions
* stored in the array.
*/
void Sort(const vtkArraySort& sort);
/**
* Returns the set of unique coordinates along the given dimension.
*/
std::vector<CoordinateT> GetUniqueCoordinates(DimensionT dimension);
/**
* Return a read-only reference to the underlying coordinate storage. Coordinates
* for each dimension are stored contiguously as a one-dimensional array. The ordering
* of coordinates within the array depends on the order in which values were added to
* the array.
*/
const CoordinateT* GetCoordinateStorage(DimensionT dimension) const;
/**
* Return a mutable reference to the underlying coordinate storage. Coordinates
* for each dimension are stored contiguously as a one-dimensional array. The ordering
* of coordinates within the array depends on the order in which values were added to
* the array, and any subsequent sorting. Use at your own risk!
*/
CoordinateT* GetCoordinateStorage(DimensionT dimension);
/**
* Return a read-only reference to the underlying value storage. Values are stored
* contiguously, but in arbitrary order. Use GetCoordinateStorage() if you need to
* get the corresponding coordinates for a value.
*/
const T* GetValueStorage() const;
/**
* Return a mutable reference to the underlying value storage. Values are stored
* contiguously, but in arbitrary order. Use GetCoordinateStorage() if you need to
* get the corresponding coordinates for a value. Use at your own risk!
*/
T* GetValueStorage();
/**
* Reserve storage for a specific number of values. This is useful for reading external
* data using GetCoordinateStorage() and GetValueStorage(), when the total
* number of non-nullptr values in the array can be determined in advance. Note that after
* calling ReserveStorage(), all coordinates and values will be undefined, so you must
* ensure that every set of coordinates and values is overwritten. It is the caller's
* responsibility to ensure that duplicate coordinates are not inserted into the array.
*/
void ReserveStorage(const SizeT value_count);
/**
* Update the array extents to match its contents, so that the extent along each dimension
* matches the maximum index value along that dimension.
*/
void SetExtentsFromContents();
/**
* Specify arbitrary array extents, without altering the contents of the array. Note
* that the extents must be as-large-or-larger-than the extents of the actual values
* stored in the array. The number of dimensions in the supplied extents must match the
* number of dimensions currently stored in the array.
*/
void SetExtents(const vtkArrayExtents& extents);
//@{
/**
* Adds a new non-null element to the array. Does not test to see if an element with
* matching coordinates already exists. Useful for providing fast initialization of the
* array as long as the caller is prepared to guarantee that no duplicate coordinates are
* ever used.
*/
inline void AddValue(CoordinateT i, const T& value);
inline void AddValue(CoordinateT i, CoordinateT j, const T& value);
inline void AddValue(CoordinateT i, CoordinateT j, CoordinateT k, const T& value);
void AddValue(const vtkArrayCoordinates& coordinates, const T& value);
//@}
/**
* Validate the contents of the array, returning false if there are any problems.
* Potential problems include duplicate coordinates, which can be introduced into the
* array either through AddValue() or direct access to coordinates storage; and coordinates
* out-of-bounds given the current array extents.
* Note that Validate() is a heavyweight O(N log N) operation that is intended for
* temporary use during debugging.
*/
bool Validate();
protected:
vtkSparseArray();
~vtkSparseArray() override;
private:
vtkSparseArray(const vtkSparseArray&) = delete;
void operator=(const vtkSparseArray&) = delete;
void InternalResize(const vtkArrayExtents& extents) override;
void InternalSetDimensionLabel(DimensionT i, const vtkStdString& label) override;
vtkStdString InternalGetDimensionLabel(DimensionT i) override;
typedef vtkSparseArray<T> ThisT;
/**
* Stores the current array extents (size along each dimension)
*/
vtkArrayExtents Extents;
/**
* Stores a label for each array dimension
*/
std::vector<vtkStdString> DimensionLabels;
/**
* Stores the coordinates of each non-null element within the array,
* using one contiguous array to store the coordinates for each dimension.
*/
std::vector<std::vector<CoordinateT> > Coordinates;
/**
* Stores the value of each non-null element within the array
*/
std::vector<T> Values;
//@{
/**
* Stores the value that will be returned when accessing nullptr areas
* of the array.
*/
T NullValue;
//@}
};
#include "vtkSparseArray.txx"
#endif
// VTK-HeaderTest-Exclude: vtkSparseArray.h